Welcome to SoMART,
the home for Solanaceae miRNA/tasiRNA Analysis Resources and Tools.

Please choose a tool below.

Slicer Detector
Detect small RNAs that can potentially target your gene of interest from
sRNA-seq libraries in potato, tomato, and tobacco.

Target Detector
Detect targets of input small RNA from Solanacea transcript databases

dRNA mapper
The degradome RNA-seq (dRNA-seq) library from wild type potato, tomato,
and tobacco are available for detecting cleavage product from your gene
of interest.

preMIR detector
Detect genetic loci or precursor sequences of your input small RNA and
determine if they can fold into MIR structures.

sRNA Mapper (bowtie)||sRNA Mapper (blastn)
The small RNA (sRNA-seq) libraries from potato, tomato, and tobacco are
available for detecting and mapping sRNAs produced from your gene of
interest in each species.


SMART COMPARE
Compare results from Slicer Detector and dRNA mapper and Identify slicers
supported by dRNA reads mapped to predicted cleavage site.

amiRNA design
Generate primers needed to make amiRNA construct

Baker lab JBrowse
Jbrowse v.1.16.3 for tomato, potato, tobacco, arabidopsis


JBrowse for Dinesh
Tomato Jbrowse v.1.16.6 for Dinesh-Kumar

Filtered with RNA central ribosomal sequences

Slicer Detector
Detect small RNAs that can potentially target your gene of interest from
sRNA-seq libraries tomato filtered with RNA Central ribo sequences.
tomato sRNA Mapper (bowtie)||tomato sRNA Mapper (blastn)
bowtie/blastn ribo filtered tomato